我正在使用 R 编程语言。我正在尝试更多地了解“并行计算和并行处理”,这将使我能够更有效地使用计算机对大量数据执行更快的操作。
例如,这是一个 R 例程,它生成一个大的点网格,然后对这些点的每一行执行一系列计算(由“函数”定义)并保存结果:
library(dplyr)
library(data.table)
results_table <- data.frame()
grid_function <- function(train_data,random_1,random_2,random_3,random_4,split_1,split_2,split_3) {
#bin data according to random criteria
train_data <- train_data %>% mutate(cat = ifelse(a1 <= random_1 & b1 <= random_3,"a",ifelse(a1 <= random_2 & b1 <= random_4,"b","c")))
train_data$cat = as.factor(train_data$cat)
#new splits
a_table = train_data %>%
filter(cat == "a") %>%
select(a1,b1,c1,cat)
b_table = train_data %>%
filter(cat == "b") %>%
select(a1,cat)
c_table = train_data %>%
filter(cat == "c") %>%
select(a1,cat)
#calculate random quantile ("quant") for each bin
table_a = data.frame(a_table%>% group_by(cat) %>%
mutate(quant = quantile(c1,prob = split_1)))
table_b = data.frame(b_table%>% group_by(cat) %>%
mutate(quant = quantile(c1,prob = split_2)))
table_c = data.frame(c_table%>% group_by(cat) %>%
mutate(quant = quantile(c1,prob = split_3)))
#create a new variable ("diff") that measures if the quantile is bigger tha the value of "c1"
table_a$diff = ifelse(table_a$quant > table_a$c1,1,0)
table_b$diff = ifelse(table_b$quant > table_b$c1,0)
table_c$diff = ifelse(table_c$quant > table_c$c1,0)
#group all tables
final_table = rbind(table_a,table_b,table_c)
#create a table: for each bin,calculate the average of "diff"
final_table_2 = data.frame(final_table %>%
group_by(cat) %>%
summarize(
mean = mean(diff)
))
#add "total mean" to this table
final_table_2 = data.frame(final_table_2 %>% add_row(cat = "total",mean = mean(final_table$diff)))
#format this table: add the random criteria to this table for reference
final_table_2$random_1 = random_1
final_table_2$random_2 = random_2
final_table_2$random_3 = random_3
final_table_2$random_4 = random_4
final_table_2$split_1 = split_1
final_table_2$split_2 = split_2
final_table_2$split_3 = split_3
results_table <- rbind(results_table,final_table_2)
final_results = dcast(setDT(results_table),random_1 + random_2 + random_3 + random_4 + split_1 + split_2 + split_3 ~ cat,value.var = 'mean')
}
# create some data for this example
a1 = rnorm(1000,100,10)
b1 = rnorm(1000,5)
c1 = sample.int(1000,1000,replace = TRUE)
train_data = data.frame(a1,c1)
#grid
random_1 <- seq(80,5)
random_2 <- seq(85,120,5)
random_3 <- seq(85,5)
random_4 <- seq(90,5)
split_1 = seq(0,0.1)
split_2 = seq(0,0.1)
split_3 = seq(0,0.1)
DF_1 <- expand.grid(random_1,split_3)
#reduce the size of the grid for this example
DF_1 = DF_1[1:100,]
colnames(DF_1) <- c("random_1","random_2","random_3","random_4","split_1","split_2","split_3")
train_data_new <- copy(train_data)
resultdf1 <- apply(DF_1,# 1 means rows
FUN=function(x){
do.call(
# Call Function grid_function2 with the arguments in
# a list
grid_function,# force list type for the arguments
c(list(train_data_new),as.list(
# make the row to a named vector
unlist(x)
)
))
}
)
l = resultdf1
final_output = rbindlist(l,fill = TRUE)
代码运行完成后,最终输出如下所示:
#this is the final output from my code - should be a data frame:
head(final_output)
random_1 random_2 random_3 random_4 split_1 split_2 split_3 b c total a
1: 80 85 85 90 0.5 0.5 0.5 0.5 0.5000000 0.500 NA
2: 85 85 85 90 0.5 0.5 0.5 0.5 0.5000000 0.500 NA
3: 90 85 85 90 0.5 0.5 0.5 0.5 0.5000000 0.500 NA
4: 95 85 85 90 0.5 0.5 0.5 0.5 0.4994985 0.499 0
5: 100 85 85 90 0.5 0.5 0.5 0.5 0.4994985 0.499 0
6: 80 90 85 90 0.5 0.5 0.5 0.5 0.4989960 0.499 NA
问题:现在,我想看看是否可以为“更大”的网格运行上述代码 - 例如“DF_1”有数百万行。
到目前为止我尝试过的:我发现了这个名为“futre.apply”(https://cran.r-project.org/web/packages/future.apply/vignettes/future.apply-1-overview.html)的库,它可以在对更大的数据集执行计算时更好地利用计算机的功能.
我从上面的问题重新定义了“完整网格”:
random_1 <- seq(80,5)
random_2 <- seq(85,5)
random_3 <- seq(85,5)
random_4 <- seq(90,5)
split_1 = seq(0,0.1)
split_2 = seq(0,0.1)
split_3 = seq(0,0.1)
DF_1 <- expand.grid(random_1,split_3)
然后,我尝试设置“future.apply”库以更有效的方式执行代码:
library(future.apply)
args = list(X = DF_1,MARGIN = 1,FUN = function(x){ # I did not run it entirely because I guesss it can be very long so only the 200 st rows
do.call(
# Call Function grid_function with the arguments in
# a list
grid_function,# force list type for the arguments
c(list(train_data_new),as.list(
# make the row to a named vector
unlist(x)
)
))
})
#launch code to run in parallel (note: if you set DF_1 = DF_1[1:100,],then "a" runs very quickly)
a = do.call(future_apply,args)
这段代码已经运行了大约 1 小时 - 看到网格非常大:我不确定这是否会最终完成运行,还是会无限期运行(即“future_apply”的限制)
问题:有谁知道这段代码是否有可能完成运行,或者是否有其他方法可以“并行化”这段代码并使其更有效?
谢谢