curl 'http://localhost:7200/rest/data/import/upload/w2/url' -H 'Content-Type: application/json;charset=UTF-8' -H 'Accept: application/json,text/plain,*/*' --data-binary '{"type":"url","name":"http://data.bioontology.org/ontologies/ICD9CM/submissions/17/download?apikey=8b5b7825-538d-40e0-9e9e-5ab9274a9aeb","format":"text/turtle","data":"http://data.bioontology.org/ontologies/ICD9CM/submissions/17/download?apikey=8b5b7825-538d-40e0-9e9e-5ab9274a9aeb","status":"NONE","message":"","context":"","replaceGraphs":[],"baseURI":null,"forceSerial":false,"timestamp":1534939094325,"parserSettings":{"preserveBNodeIds":false,"failOnUnknownDataTypes":false,"verifyDataTypeValues":false,"normalizeDataTypeValues":false,"failOnUnknownLanguageTags":false,"verifyLanguageTags":true,"normalizeLanguageTags":false,"verifyURISyntax":true,"verifyRelativeURIs":true,"stopOnError":true}}

GraphDB处理api密钥，但是您应该以up或“ format”：“ text / turtle”的方式提供文件格式。希望这会有所帮助。

curl 'http://localhost:7200/rest/data/import/upload/abc/url' -H 'Content-Type: application/json;charset=UTF-8' -H 'Accept: application/json,"name":"http://www.w3.org/TR/owl-guide/wine.rdf","format":"","data":"http://www.w3.org/TR/owl-guide/wine.rdf","stopOnError":true}}'

哪里

• abc-是存储库ID
• http://www.w3.org/TR/owl-guide/wine.rdf-是要导入的URL
• 1534939094325-自纪元以来的当前时间戳（以bash为单位，等效于date +%s）

如果要执行定期更新，建议您将每个文件放在自己的图形中（使用"context":"<file's url>"），然后将其替换为"replaceGraphs":"<file's url>"。数据库将创建增量并仅更新更改的语句。

借助于Ontotext的Sava，我能够构造此最小的curl命令，从而成功地从NCBO BioPortal加载了ICD9CM Turtle文件。

curl -d \
'{"type":"url","context":"http://data.bioontology.org/ontologies/ICD9CM/"}' \
-H 'Content-Type: application/json;charset=UTF-8' \
-X POST http://localhost:7200/rest/data/import/upload/disease_diagnosis_dev/url

• 我遗漏了许多键，包括timestamp和所有parserSettings。
• 我使用的是- d ... -X POST卷曲样式而不是--data-binary样式

我并不是声称知道这些决定的所有后果。

这是我在R中的方法

library(httr)
post.endpoint <- "http://localhost:7200//rest/data/import/upload/disease_diagnosis_dev/url"
update.body <- '{
  "type":"url","context": "http://purl.bioontology.org/ontology/ICD9CM/","data": "http://data.bioontology.org/ontologies/ICD9CM/submissions/17/download?apikey=9cf735c3-a44a-404f-8b2f-c49d48b2b8b2"
}'

post.result <- POST(post.endpoint,body = update.body,content_type("application/json"))